PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn254831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 735aa    MW: 81218.7 Da    PI: 6.2763
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn254831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-16234325198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f+kvl+ sd+++ grlvlpk +ae  g++      l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l+++++
  Achn254831 234 FEKVLSASDAGRIGRLVLPKACAEPEGLP------LRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLLMGFR 324
                 99*********************766666......***************9989999999***9.********************987.7777777776 PP

                 - CS
          B3  98 r 98 
                 +
  Achn254831 325 K 325
                 5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-23226337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-15231325IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-20232325No hitNo description
SMARTSM010199.9E-17234326IPR003340B3 DNA binding domain
PROSITE profilePS5086310.574234327IPR003340B3 DNA binding domain
PfamPF023627.9E-14234325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MVLLKLFQQT SNDENPKGLS MSTSNNNSEK QLTPVDNKVD GDNVTAMNHE QLDNSDVRNG  60
LKDLLPSHND DAHGGQIKEE EVLPPRGEVG NMSSSNVNQV SIGSSEAAKV DIYKANTGIK  120
DLYESLAQTN LTIALASPSG NSNHAVVEDR ELGKTISSFQ QVSRSRQLLP KPPKSILATG  180
LETNASMVPQ IRVARPPAEG RLKNQLLPRY WPRITDQELQ LISGDSNSTI VPLFEKVLSA  240
SDAGRIGRLV LPKACAEPEG LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM  300
QLQAGDTVTF SRIDPEGKLL MGFRKALNAI AMQSLADSHL NALSKPLNSA GGDFSWHIME  360
KHASDTKDGL LLPSMLAPDR KRSRNIGSKS KRLLIDSQDA LELKLTWEEA QDMLLPPLSE  420
KPSILTIEDQ EFEEYEEPPV FAKRSIFTAR SSGCLCSAPD ELSPRELEYL LKLNKEFKKR  480
RMLTSHRMVQ EHDAATLDAL ANTAVLGDNT SDPGGAFVAT TTKHPRHRPG CSCIVCIQPP  540
SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQTEREAEI AQRNHYMWGI KDEAEVDSTI  600
THPDPPENKG ILANELQLRD QINNLSHKTP EIGKGGLDLN SDPEREEQLH QGSTRVSMMS  660
LLQVASLPLE TYLKQNGLTS LISEQEGSSG SQSLPPATTG ESEGPVHEDH CVVHVVQEHE  720
SRDDELDNSR NDPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1123332013110DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558569KRRFKTLMMRKK
2558571KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653338.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLF6GXW80.0F6GXW8_VITVI; Putative uncharacterized protein
STRINGVIT_08s0058g01300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1